PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002041001
Common NameGSBRNA2T00002041001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 230aa    MW: 24502.3 Da    PI: 8.5958
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.33.3e-383090262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk+ k+s
  GSBRNA2T00002041001 30 QQEQLPCPRCNSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKSAKRS 90
                         68999***************************************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-302888IPR003851Zinc finger, Dof-type
PfamPF027015.1E-333288IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1433488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMMSDSGESR QIAMRPHGVI TGLPPTASEQ QEQLPCPRCN STNTKFCYYN NYNFSQPRHF  60
CKSCRRYWTH GGTLRDIPVG GGTRKSAKRS RTCSGTSSVP LQATPVLFPH SSTSNGVSHT  120
VTAPLENDGK GSALSLSGNF TSLLNQNNAA HGTGSVIGIG LGSSFDDVSF GLGRAVWPFS  180
TVGDSATTNV PGVAVPYTWQ FEGLESSNAV EYFAWPDLSI TTPGRNSLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.85520.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002041001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893791e-142AC189379.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602377.11e-170PREDICTED: dof zinc finger protein DOF3.4-like
SwissprotQ390881e-100DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A078FZK41e-170A0A078FZK4_BRANA; BnaC08g21910D protein
TrEMBLA0A0D3DRY31e-170A0A0D3DRY3_BRAOL; Uncharacterized protein
STRINGBra036082.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-101OBF binding protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]